ycgR [2019-06-07 08:32:25]

unknown

locus: BSU03250

pI: 9.50

mw: 31.78 kDa

protein length: 294 aa

gene length: 885 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 350,858 351,742

The protein

Protein family

• UPF0718 family (according to Swiss-Prot)

[SW|Localization]

• cell membrane (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|51EF3C9A48FA7367576656F5E79D38D1B56BF6A5|ycgR]-[gene|99C8AA68035A9580FA3145ABE66F4DD63CDD6AE8|ycgQ]
  description: [pubmed|22383849]

  sigma factors

  • [protein|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM]: sigma factor, [Pubmed|18179421], in [regulon|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM regulon]
  • [protein|D04629D798E458AD538809BB2B150B7FA81D2C7E|SigV]: sigma factor, [pubmed|], in [regulon|D04629D798E458AD538809BB2B150B7FA81D2C7E|SigV regulon]

  regulation

  • expression is reduced in a [[SigV]] mutant [Pubmed|21926231]

• genes: [gene|1AA67AD33622538F7BAD64B54FAE6FD8103BF9BE|ycgS]-[gene|51EF3C9A48FA7367576656F5E79D38D1B56BF6A5|ycgR]-[gene|99C8AA68035A9580FA3145ABE66F4DD63CDD6AE8|ycgQ]
  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-B996 (ycgR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1995 NBRP B. subtilis, Japan]
• BKE03250 ([gene|51EF3C9A48FA7367576656F5E79D38D1B56BF6A5|ycgR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACAATAAAACCTCCGCTCA, downstream forward: _UP4_TCACTACTGGTAAAGGGGTG
• BKK03250 ([gene|51EF3C9A48FA7367576656F5E79D38D1B56BF6A5|ycgR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACAATAAAACCTCCGCTCA, downstream forward: _UP4_TCACTACTGGTAAAGGGGTG